Index

A

accept() (sepia.SepiaMCMC method)

add_samples() (sepia.SepiaModel method)

C

calc_accept() (sepia.SepiaParam method) calc_accept_rate() (sepia.SepiaParam method) clear_samples() (sepia.SepiaModel method) compute_cov_mat() (sepia.SepiaDistCov method)

compute_log_lik() (in module sepia.SepiaLogLik) compute_log_prior() (sepia.SepiaPrior method) create_D_basis() (sepia.SepiaData method) create_K_basis() (sepia.SepiaData method) cv_predicted_vs_true() (in module sepia.SepiaPlot)

D

DataContainer (class in sepia) do_mcmc() (sepia.SepiaHierarchicalThetaModels method) (sepia.SepiaModel method) (sepia.SepiaSharedThetaModels.SepiaSharedThetaModels method)

draw_candidate() (sepia.SepiaMCMC method)

G

get_discrepancy() (sepia.SepiaFullPrediction method) get_last_sample_ind() (sepia.SepiaModel method) get_mu_sigma() (sepia.SepiaEmulatorPrediction method) (sepia.SepiaFullPrediction method) get_num_samples() (sepia.SepiaModel method) (sepia.SepiaParam method) get_samples() (sepia.SepiaHierarchicalThetaModels method) (sepia.SepiaModel method) (sepia.SepiaSharedThetaModels.SepiaSharedThetaModels method)

get_u_v() (sepia.SepiaFullPrediction method) get_w() (sepia.SepiaEmulatorPrediction method) get_y() (sepia.SepiaEmulatorPrediction method) get_yobs() (sepia.SepiaFullPrediction method) get_ysim() (sepia.SepiaFullPrediction method)

I

is_in_bounds() (sepia.SepiaPrior method)

L

log_prior() (sepia.SepiaModel method)

logLik() (sepia.SepiaModel method) logPost() (sepia.SepiaModel method)

M

mcmc_to_array() (sepia.SepiaParam method) mcmc_trace() (in module sepia.SepiaPlot) ModelContainer (class in sepia) module sepia sepia.SepiaLogLik sepia.SepiaPlot sepia.SepiaSensitivity sepia.SepiaSharedThetaModels

O

obeys_constraint() (sepia.SepiaPrior method)

P

param_stats() (in module sepia.SepiaPlot) pca_projected_data() (in module sepia.SepiaPlot) plot_acf() (in module sepia.SepiaPlot) plot_data() (in module sepia.SepiaPlot) plot_K_basis() (in module sepia.SepiaPlot) plot_K_residuals() (in module sepia.SepiaPlot)

plot_K_weights() (in module sepia.SepiaPlot) plot_u_w_pairs() (in module sepia.SepiaPlot) print_mcmc_info() (sepia.SepiaModel method) print_prior_info() (sepia.SepiaModel method) print_priors_for_mcmc() (sepia.SepiaModel method) print_value_info() (sepia.SepiaModel method)

R

record() (sepia.SepiaMCMC method) reject() (sepia.SepiaMCMC method)

restore_model_info() (sepia.SepiaModel method) rho_box_plots() (in module sepia.SepiaPlot)

S

save_model_info() (sepia.SepiaModel method) sensitivity() (in module sepia.SepiaSensitivity) sepia module sepia.SepiaLogLik module sepia.SepiaPlot module sepia.SepiaSensitivity module sepia.SepiaSharedThetaModels module SepiaData (class in sepia) SepiaDistCov (class in sepia)

SepiaEmulatorPrediction (class in sepia) SepiaFullPrediction (class in sepia) SepiaHierarchicalThetaModels (class in sepia) SepiaMCMC (class in sepia) SepiaModel (class in sepia) SepiaParam (class in sepia) SepiaPrediction (class in sepia) SepiaPrior (class in sepia) SepiaSharedThetaModels (class in sepia.SepiaSharedThetaModels) SepiaXvalEmulatorPrediction (class in sepia) set_mean_basis() (sepia.SepiaData method) set_model_to_sample() (sepia.SepiaModel method) set_val() (sepia.SepiaParam method) standardize_y() (sepia.SepiaData method)

T

theta_pairs() (in module sepia.SepiaPlot)

transform_xt() (sepia.SepiaData method) tune_step_sizes() (sepia.SepiaModel method)

U

untransform_theta() (sepia.SepiaParam method)